Hierarchical Event Descriptor (HED) Python ToolsΒΆ
Note: this is a work in progress. More information is coming.
- HED API reference
- errors
- error_messages
SIDECAR_HED_USED()
SIDECAR_HED_USED_COLUMN()
def_error_bad_location()
def_error_def_tag_in_definition()
def_error_duplicate_definition()
def_error_invalid_def_extension()
def_error_no_group_tags()
def_error_no_takes_value()
def_error_wrong_group_tags()
def_error_wrong_placeholder_count()
invalid_column_ref()
nested_column_ref()
onset_error_def_unmatched()
onset_error_inset_before_onset()
onset_error_offset_before_onset()
onset_error_same_defs_one_row()
onset_no_def_found()
onset_too_many_defs()
onset_too_many_groups()
onset_wrong_placeholder()
onset_wrong_type_tag()
self_column_ref()
sidecar_error_blank_hed_string()
sidecar_error_hed_data_type()
sidecar_error_invalid_pound_sign_count()
sidecar_error_too_many_pound_signs()
sidecar_error_unknown_column()
sidecar_na_used()
val_error_CURLY_BRACE_UNSUPPORTED_HERE()
val_error_ONSETS_OUT_OF_ORDER()
val_error_bad_def_expand()
val_error_comma_missing()
val_error_def_expand_unmatched()
val_error_def_expand_value_extra()
val_error_def_expand_value_missing()
val_error_def_unmatched()
val_error_def_value_extra()
val_error_def_value_missing()
val_error_duplicate_column()
val_error_duplicate_group()
val_error_duplicate_tag()
val_error_empty_group()
val_error_extra_column()
val_error_extra_comma()
val_error_extra_slashes_spaces()
val_error_hed_blank_column()
val_error_hed_onset_with_no_column()
val_error_invalid_char()
val_error_invalid_extension()
val_error_invalid_parent()
val_error_invalid_tag_character()
val_error_invalid_unit()
val_error_missing_column()
val_error_multiple_unique()
val_error_no_valid_tag()
val_error_no_value()
val_error_parentheses()
val_error_prefix_invalid()
val_error_require_child()
val_error_sidecar_key_missing()
val_error_sidecar_with_column()
val_error_tag_extended()
val_error_tag_group_tag()
val_error_tildes_not_supported()
val_error_top_level_tag()
val_error_top_level_tags()
val_error_unknown_namespace()
val_warning_capitalization()
val_warning_default_units_used()
val_warning_required_prefix_missing()
- error_reporter
check_for_any_errors()
create_doc_link()
get_printable_issue_string()
get_printable_issue_string_html()
hed_error()
hed_tag_error()
replace_tag_references()
sort_issues()
- ErrorHandler
ErrorHandler.__init__()
ErrorHandler.add_context_and_filter()
ErrorHandler.filter_issues_by_severity()
ErrorHandler.format_error()
ErrorHandler.format_error_from_context()
ErrorHandler.format_error_with_context()
ErrorHandler.get_error_context_copy()
ErrorHandler.pop_error_context()
ErrorHandler.push_error_context()
ErrorHandler.reset_error_context()
ErrorHandler.val_error_unknown()
- error_types
- ColumnErrors
- DefinitionErrors
DefinitionErrors.__init__()
DefinitionErrors.BAD_DEFINITION_LOCATION
DefinitionErrors.BAD_PROP_IN_DEFINITION
DefinitionErrors.DEF_TAG_IN_DEFINITION
DefinitionErrors.DUPLICATE_DEFINITION
DefinitionErrors.INVALID_DEFINITION_EXTENSION
DefinitionErrors.NO_DEFINITION_CONTENTS
DefinitionErrors.PLACEHOLDER_NO_TAKES_VALUE
DefinitionErrors.WRONG_NUMBER_GROUPS
DefinitionErrors.WRONG_NUMBER_PLACEHOLDER_TAGS
DefinitionErrors.WRONG_NUMBER_TAGS
- ErrorContext
- ErrorSeverity
- OnsetErrors
OnsetErrors.__init__()
OnsetErrors.HED_ONSET_WITH_NO_COLUMN
OnsetErrors.INSET_BEFORE_ONSET
OnsetErrors.OFFSET_BEFORE_ONSET
OnsetErrors.ONSET_DEF_UNMATCHED
OnsetErrors.ONSET_NO_DEF_TAG_FOUND
OnsetErrors.ONSET_PLACEHOLDER_WRONG
OnsetErrors.ONSET_SAME_DEFS_ONE_ROW
OnsetErrors.ONSET_TAG_OUTSIDE_OF_GROUP
OnsetErrors.ONSET_TOO_MANY_DEFS
OnsetErrors.ONSET_WRONG_NUMBER_GROUPS
- SchemaAttributeErrors
SchemaAttributeErrors.__init__()
SchemaAttributeErrors.SCHEMA_ALLOWED_CHARACTERS_INVALID
SchemaAttributeErrors.SCHEMA_ATTRIBUTE_INVALID
SchemaAttributeErrors.SCHEMA_ATTRIBUTE_VALUE_INVALID
SchemaAttributeErrors.SCHEMA_CHILD_OF_DEPRECATED
SchemaAttributeErrors.SCHEMA_CONVERSION_FACTOR_NOT_POSITIVE
SchemaAttributeErrors.SCHEMA_DEFAULT_UNITS_INVALID
SchemaAttributeErrors.SCHEMA_DEPRECATED_INVALID
SchemaAttributeErrors.SCHEMA_IN_LIBRARY_INVALID
SchemaAttributeErrors.SCHEMA_SUGGESTED_TAG_INVALID
SchemaAttributeErrors.SCHEMA_UNIT_CLASS_INVALID
SchemaAttributeErrors.SCHEMA_VALUE_CLASS_INVALID
- SchemaErrors
- SchemaWarnings
- SidecarErrors
SidecarErrors.__init__()
SidecarErrors.BLANK_HED_STRING
SidecarErrors.INVALID_POUND_SIGNS_CATEGORY
SidecarErrors.INVALID_POUND_SIGNS_VALUE
SidecarErrors.SIDECAR_BRACES_INVALID
SidecarErrors.SIDECAR_HED_USED
SidecarErrors.SIDECAR_HED_USED_COLUMN
SidecarErrors.SIDECAR_NA_USED
SidecarErrors.UNKNOWN_COLUMN_TYPE
SidecarErrors.WRONG_HED_DATA_TYPE
- ValidationErrors
ValidationErrors.__init__()
ValidationErrors.CHARACTER_INVALID
ValidationErrors.COMMA_MISSING
ValidationErrors.CURLY_BRACE_UNSUPPORTED_HERE
ValidationErrors.DEFINITION_INVALID
ValidationErrors.DEF_EXPAND_INVALID
ValidationErrors.DEF_INVALID
ValidationErrors.DUPLICATE_COLUMN_BETWEEN_SOURCES
ValidationErrors.DUPLICATE_COLUMN_IN_LIST
ValidationErrors.HED_BLANK_COLUMN
ValidationErrors.HED_DEF_EXPAND_INVALID
ValidationErrors.HED_DEF_EXPAND_UNMATCHED
ValidationErrors.HED_DEF_EXPAND_VALUE_EXTRA
ValidationErrors.HED_DEF_EXPAND_VALUE_MISSING
ValidationErrors.HED_DEF_UNMATCHED
ValidationErrors.HED_DEF_VALUE_EXTRA
ValidationErrors.HED_DEF_VALUE_MISSING
ValidationErrors.HED_GROUP_EMPTY
ValidationErrors.HED_LIBRARY_UNMATCHED
ValidationErrors.HED_MISSING_REQUIRED_COLUMN
ValidationErrors.HED_MULTIPLE_TOP_TAGS
ValidationErrors.HED_TAG_GROUP_TAG
ValidationErrors.HED_TAG_REPEATED
ValidationErrors.HED_TAG_REPEATED_GROUP
ValidationErrors.HED_TOP_LEVEL_TAG
ValidationErrors.HED_UNKNOWN_COLUMN
ValidationErrors.INVALID_PARENT_NODE
ValidationErrors.INVALID_TAG_CHARACTER
ValidationErrors.NODE_NAME_EMPTY
ValidationErrors.NO_VALID_TAG_FOUND
ValidationErrors.ONSETS_OUT_OF_ORDER
ValidationErrors.ONSET_OFFSET_INSET_ERROR
ValidationErrors.PARENTHESES_MISMATCH
ValidationErrors.PLACEHOLDER_INVALID
ValidationErrors.REQUIRED_TAG_MISSING
ValidationErrors.SIDECAR_AND_OTHER_COLUMNS
ValidationErrors.SIDECAR_INVALID
ValidationErrors.SIDECAR_KEY_MISSING
ValidationErrors.STYLE_WARNING
ValidationErrors.TAG_EMPTY
ValidationErrors.TAG_EXPRESSION_REPEATED
ValidationErrors.TAG_EXTENDED
ValidationErrors.TAG_EXTENSION_INVALID
ValidationErrors.TAG_GROUP_ERROR
ValidationErrors.TAG_INVALID
ValidationErrors.TAG_NAMESPACE_PREFIX_INVALID
ValidationErrors.TAG_NOT_UNIQUE
ValidationErrors.TAG_REQUIRES_CHILD
ValidationErrors.TILDES_UNSUPPORTED
ValidationErrors.UNITS_INVALID
ValidationErrors.UNITS_MISSING
ValidationErrors.VALUE_INVALID
ValidationErrors.VERSION_DEPRECATED
- exceptions
- HedExceptions
HedExceptions.__init__()
HedExceptions.BAD_COLUMN_NAMES
HedExceptions.BAD_HED_LIBRARY_NAME
HedExceptions.BAD_PARAMETERS
HedExceptions.BAD_WITH_STANDARD
HedExceptions.BAD_WITH_STANDARD_VERSION
HedExceptions.CANNOT_PARSE_JSON
HedExceptions.CANNOT_PARSE_RDF
HedExceptions.CANNOT_PARSE_XML
HedExceptions.FILE_NOT_FOUND
HedExceptions.GENERIC_ERROR
HedExceptions.HED_SCHEMA_NODE_NAME_INVALID
HedExceptions.INVALID_DATAFRAME
HedExceptions.INVALID_EXTENSION
HedExceptions.INVALID_FILE_FORMAT
HedExceptions.INVALID_HED_FORMAT
HedExceptions.INVALID_LIBRARY_PREFIX
HedExceptions.IN_LIBRARY_IN_UNMERGED
HedExceptions.ROOTED_TAG_DOES_NOT_EXIST
HedExceptions.ROOTED_TAG_HAS_PARENT
HedExceptions.ROOTED_TAG_INVALID
HedExceptions.SCHEMA_DUPLICATE_LIBRARY
HedExceptions.SCHEMA_DUPLICATE_NAMES
HedExceptions.SCHEMA_DUPLICATE_PREFIX
HedExceptions.SCHEMA_HEADER_INVALID
HedExceptions.SCHEMA_HEADER_MISSING
HedExceptions.SCHEMA_LIBRARY_INVALID
HedExceptions.SCHEMA_SECTION_MISSING
HedExceptions.SCHEMA_UNKNOWN_HEADER_ATTRIBUTE
HedExceptions.SCHEMA_VERSION_INVALID
HedExceptions.URL_ERROR
HedExceptions.WIKI_DELIMITERS_INVALID
HedExceptions.WIKI_LINE_START_INVALID
HedExceptions.WIKI_SEPARATOR_INVALID
- hed.errors.exceptions.HedFileError
- HedExceptions
- known_error_codes
- schema_error_messages
schema_error_SCHEMA_ALLOWED_CHARACTERS_INVALID()
schema_error_SCHEMA_CHILD_OF_DEPRECATED()
schema_error_SCHEMA_CONVERSION_FACTOR_NOT_POSITIVE()
schema_error_SCHEMA_DEFAULT_UNITS_INVALID()
schema_error_SCHEMA_DEPRECATED_INVALID()
schema_error_SCHEMA_IN_LIBRARY_INVALID()
schema_error_SCHEMA_SUGGESTED_TAG_INVALID()
schema_error_SCHEMA_UNIT_CLASS_INVALID()
schema_error_SCHEMA_VALUE_CLASS_INVALID()
schema_error_hed_duplicate_from_library()
schema_error_hed_duplicate_node()
schema_error_unknown_attribute()
schema_warning_SCHEMA_INVALID_CAPITALIZATION()
schema_warning_invalid_chars_desc()
schema_warning_invalid_chars_tag()
schema_warning_non_placeholder_class()
- error_messages
- models
- base_input
- BaseInput
BaseInput.__init__()
BaseInput.assemble()
BaseInput.column_metadata()
BaseInput.combine_dataframe()
BaseInput.convert_to_form()
BaseInput.convert_to_long()
BaseInput.convert_to_short()
BaseInput.expand_defs()
BaseInput.get_column_refs()
BaseInput.get_def_dict()
BaseInput.get_worksheet()
BaseInput.reset_mapper()
BaseInput.set_cell()
BaseInput.shrink_defs()
BaseInput.to_csv()
BaseInput.to_excel()
BaseInput.validate()
BaseInput.COMMA_DELIMITER
BaseInput.EXCEL_EXTENSION
BaseInput.FILE_EXTENSION
BaseInput.FILE_INPUT
BaseInput.STRING_INPUT
BaseInput.TAB_DELIMITER
BaseInput.TEXT_EXTENSION
BaseInput.columns
BaseInput.dataframe
BaseInput.dataframe_a
BaseInput.has_column_names
BaseInput.loaded_workbook
BaseInput.name
BaseInput.needs_sorting
BaseInput.onsets
BaseInput.series_a
BaseInput.series_filtered
BaseInput.worksheet_name
- BaseInput
- basic_search
- column_mapper
- ColumnMapper
ColumnMapper.__init__()
ColumnMapper.check_for_blank_names()
ColumnMapper.check_for_mapping_issues()
ColumnMapper.get_column_mapping_issues()
ColumnMapper.get_def_dict()
ColumnMapper.get_tag_columns()
ColumnMapper.get_transformers()
ColumnMapper.set_column_map()
ColumnMapper.set_column_prefix_dictionary()
ColumnMapper.set_tag_columns()
ColumnMapper.column_prefix_dictionary
ColumnMapper.sidecar_column_data
ColumnMapper.tag_columns
- ColumnMapper
- column_metadata
- def_expand_gather
- definition_dict
- definition_entry
- df_util
- hed_group
- HedGroup
HedGroup.__init__()
HedGroup.append()
HedGroup.check_if_in_original()
HedGroup.copy()
HedGroup.find_def_tags()
HedGroup.find_exact_tags()
HedGroup.find_placeholder_tag()
HedGroup.find_tags()
HedGroup.find_tags_with_term()
HedGroup.find_wildcard_tags()
HedGroup.get_all_groups()
HedGroup.get_all_tags()
HedGroup.get_as_form()
HedGroup.get_as_indented()
HedGroup.get_as_long()
HedGroup.get_as_short()
HedGroup.get_first_group()
HedGroup.get_original_hed_string()
HedGroup.groups()
HedGroup.lower()
HedGroup.remove()
HedGroup.replace()
HedGroup.sort()
HedGroup.sorted()
HedGroup.tags()
HedGroup.is_group
HedGroup.span
- HedGroup
- hed_string
- HedString
HedString.__init__()
HedString.append()
HedString.check_if_in_original()
HedString.copy()
HedString.expand_defs()
HedString.find_def_tags()
HedString.find_exact_tags()
HedString.find_placeholder_tag()
HedString.find_tags()
HedString.find_tags_with_term()
HedString.find_top_level_tags()
HedString.find_wildcard_tags()
HedString.from_hed_strings()
HedString.get_all_groups()
HedString.get_all_tags()
HedString.get_as_form()
HedString.get_as_indented()
HedString.get_as_long()
HedString.get_as_original()
HedString.get_as_short()
HedString.get_first_group()
HedString.get_original_hed_string()
HedString.groups()
HedString.lower()
HedString.remove()
HedString.remove_definitions()
HedString.remove_refs()
HedString.replace()
HedString.shrink_defs()
HedString.sort()
HedString.sorted()
HedString.split_hed_string()
HedString.split_into_groups()
HedString.tags()
HedString.validate()
HedString.CLOSING_GROUP_CHARACTER
HedString.OPENING_GROUP_CHARACTER
HedString.is_group
HedString.span
- HedString
- hed_tag
- HedTag
HedTag.__init__()
HedTag.base_tag_has_attribute()
HedTag.copy()
HedTag.get_stripped_unit_value()
HedTag.get_tag_unit_class_units()
HedTag.has_attribute()
HedTag.is_basic_tag()
HedTag.is_column_ref()
HedTag.is_placeholder()
HedTag.is_takes_value_tag()
HedTag.is_unit_class_tag()
HedTag.is_value_class_tag()
HedTag.lower()
HedTag.replace_placeholder()
HedTag.tag_exists_in_schema()
HedTag.tag_modified()
HedTag.value_as_default_unit()
HedTag.attributes
HedTag.base_tag
HedTag.default_unit
HedTag.expandable
HedTag.expanded
HedTag.extension
HedTag.long_tag
HedTag.org_base_tag
HedTag.org_tag
HedTag.schema_namespace
HedTag.short_base_tag
HedTag.short_tag
HedTag.tag
HedTag.unit_classes
HedTag.value_classes
- HedTag
- model_constants
- DefTagNames
DefTagNames.__init__()
DefTagNames.DEFINITION_KEY
DefTagNames.DEFINITION_ORG_KEY
DefTagNames.DEF_EXPAND_KEY
DefTagNames.DEF_EXPAND_ORG_KEY
DefTagNames.DEF_KEY
DefTagNames.DEF_KEYS
DefTagNames.DEF_ORG_KEY
DefTagNames.INSET_KEY
DefTagNames.INSET_ORG_KEY
DefTagNames.OFFSET_KEY
DefTagNames.OFFSET_ORG_KEY
DefTagNames.ONSET_KEY
DefTagNames.ONSET_ORG_KEY
DefTagNames.TEMPORAL_KEYS
- DefTagNames
- query_expressions
- query_handler
- query_service
- query_util
- sidecar
- spreadsheet_input
- SpreadsheetInput
SpreadsheetInput.__init__()
SpreadsheetInput.assemble()
SpreadsheetInput.column_metadata()
SpreadsheetInput.combine_dataframe()
SpreadsheetInput.convert_to_form()
SpreadsheetInput.convert_to_long()
SpreadsheetInput.convert_to_short()
SpreadsheetInput.expand_defs()
SpreadsheetInput.get_column_refs()
SpreadsheetInput.get_def_dict()
SpreadsheetInput.get_worksheet()
SpreadsheetInput.reset_mapper()
SpreadsheetInput.set_cell()
SpreadsheetInput.shrink_defs()
SpreadsheetInput.to_csv()
SpreadsheetInput.to_excel()
SpreadsheetInput.validate()
SpreadsheetInput.COMMA_DELIMITER
SpreadsheetInput.EXCEL_EXTENSION
SpreadsheetInput.FILE_EXTENSION
SpreadsheetInput.FILE_INPUT
SpreadsheetInput.STRING_INPUT
SpreadsheetInput.TAB_DELIMITER
SpreadsheetInput.TEXT_EXTENSION
SpreadsheetInput.columns
SpreadsheetInput.dataframe
SpreadsheetInput.dataframe_a
SpreadsheetInput.has_column_names
SpreadsheetInput.loaded_workbook
SpreadsheetInput.name
SpreadsheetInput.needs_sorting
SpreadsheetInput.onsets
SpreadsheetInput.series_a
SpreadsheetInput.series_filtered
SpreadsheetInput.worksheet_name
- SpreadsheetInput
- string_util
- tabular_input
- TabularInput
TabularInput.__init__()
TabularInput.assemble()
TabularInput.column_metadata()
TabularInput.combine_dataframe()
TabularInput.convert_to_form()
TabularInput.convert_to_long()
TabularInput.convert_to_short()
TabularInput.expand_defs()
TabularInput.get_column_refs()
TabularInput.get_def_dict()
TabularInput.get_worksheet()
TabularInput.reset_column_mapper()
TabularInput.reset_mapper()
TabularInput.set_cell()
TabularInput.shrink_defs()
TabularInput.to_csv()
TabularInput.to_excel()
TabularInput.validate()
TabularInput.COMMA_DELIMITER
TabularInput.EXCEL_EXTENSION
TabularInput.FILE_EXTENSION
TabularInput.FILE_INPUT
TabularInput.HED_COLUMN_NAME
TabularInput.STRING_INPUT
TabularInput.TAB_DELIMITER
TabularInput.TEXT_EXTENSION
TabularInput.columns
TabularInput.dataframe
TabularInput.dataframe_a
TabularInput.has_column_names
TabularInput.loaded_workbook
TabularInput.name
TabularInput.needs_sorting
TabularInput.onsets
TabularInput.series_a
TabularInput.series_filtered
TabularInput.worksheet_name
- TabularInput
- timeseries_input
- TimeseriesInput
TimeseriesInput.__init__()
TimeseriesInput.assemble()
TimeseriesInput.column_metadata()
TimeseriesInput.combine_dataframe()
TimeseriesInput.convert_to_form()
TimeseriesInput.convert_to_long()
TimeseriesInput.convert_to_short()
TimeseriesInput.expand_defs()
TimeseriesInput.get_column_refs()
TimeseriesInput.get_def_dict()
TimeseriesInput.get_worksheet()
TimeseriesInput.reset_mapper()
TimeseriesInput.set_cell()
TimeseriesInput.shrink_defs()
TimeseriesInput.to_csv()
TimeseriesInput.to_excel()
TimeseriesInput.validate()
TimeseriesInput.COMMA_DELIMITER
TimeseriesInput.EXCEL_EXTENSION
TimeseriesInput.FILE_EXTENSION
TimeseriesInput.FILE_INPUT
TimeseriesInput.HED_COLUMN_NAME
TimeseriesInput.STRING_INPUT
TimeseriesInput.TAB_DELIMITER
TimeseriesInput.TEXT_EXTENSION
TimeseriesInput.columns
TimeseriesInput.dataframe
TimeseriesInput.dataframe_a
TimeseriesInput.has_column_names
TimeseriesInput.loaded_workbook
TimeseriesInput.name
TimeseriesInput.needs_sorting
TimeseriesInput.onsets
TimeseriesInput.series_a
TimeseriesInput.series_filtered
TimeseriesInput.worksheet_name
- TimeseriesInput
- base_input
- schema
- hed_cache
- hed_schema
- HedSchema
HedSchema.__init__()
HedSchema.can_save()
HedSchema.check_compliance()
HedSchema.finalize_dictionaries()
HedSchema.find_tag_entry()
HedSchema.get_all_schema_tags()
HedSchema.get_all_tag_attributes()
HedSchema.get_as_mediawiki_string()
HedSchema.get_as_owl_string()
HedSchema.get_as_xml_string()
HedSchema.get_desc_iter()
HedSchema.get_formatted_version()
HedSchema.get_save_header_attributes()
HedSchema.get_schema_versions()
HedSchema.get_tag_attribute_names()
HedSchema.get_tag_description()
HedSchema.get_tag_entry()
HedSchema.get_tags_with_attribute()
HedSchema.get_unknown_attributes()
HedSchema.has_duplicates()
HedSchema.save_as_mediawiki()
HedSchema.save_as_owl()
HedSchema.save_as_xml()
HedSchema.schema_for_namespace()
HedSchema.set_schema_prefix()
HedSchema.attributes
HedSchema.library
HedSchema.merged
HedSchema.name
HedSchema.properties
HedSchema.schema_namespace
HedSchema.tags
HedSchema.unit_classes
HedSchema.unit_modifiers
HedSchema.units
HedSchema.valid_prefixes
HedSchema.value_classes
HedSchema.version
HedSchema.version_number
HedSchema.with_standard
- HedSchema
- hed_schema_base
- HedSchemaBase
HedSchemaBase.__init__()
HedSchemaBase.check_compliance()
HedSchemaBase.find_tag_entry()
HedSchemaBase.get_formatted_version()
HedSchemaBase.get_schema_versions()
HedSchemaBase.get_tag_entry()
HedSchemaBase.get_tags_with_attribute()
HedSchemaBase.schema_for_namespace()
HedSchemaBase.name
HedSchemaBase.valid_prefixes
- HedSchemaBase
- hed_schema_constants
- HedKey
HedKey.__init__()
HedKey.AllowedCharacter
HedKey.BoolProperty
HedKey.ConversionFactor
HedKey.DefaultUnits
HedKey.DeprecatedFrom
HedKey.ElementProperty
HedKey.ExtensionAllowed
HedKey.InLibrary
HedKey.IsInheritedProperty
HedKey.NodeProperty
HedKey.Recommended
HedKey.RelatedTag
HedKey.RequireChild
HedKey.Required
HedKey.Reserved
HedKey.Rooted
HedKey.SIUnit
HedKey.SIUnitModifier
HedKey.SIUnitSymbolModifier
HedKey.SuggestedTag
HedKey.TagGroup
HedKey.TakesValue
HedKey.TopLevelTagGroup
HedKey.Unique
HedKey.UnitClass
HedKey.UnitClassProperty
HedKey.UnitModifierProperty
HedKey.UnitPrefix
HedKey.UnitProperty
HedKey.UnitSymbol
HedKey.ValueClass
HedKey.ValueClassProperty
- HedSectionKey
- HedKey
- hed_schema_entry
- hed_schema_group
- HedSchemaGroup
HedSchemaGroup.__init__()
HedSchemaGroup.check_compliance()
HedSchemaGroup.find_tag_entry()
HedSchemaGroup.get_formatted_version()
HedSchemaGroup.get_schema_versions()
HedSchemaGroup.get_tag_entry()
HedSchemaGroup.get_tags_with_attribute()
HedSchemaGroup.schema_for_namespace()
HedSchemaGroup.name
HedSchemaGroup.valid_prefixes
- HedSchemaGroup
- hed_schema_io
- hed_schema_section
- HedSchemaSection
- HedSchemaTagSection
- HedSchemaUnitClassSection
HedSchemaUnitClassSection.__init__()
HedSchemaUnitClassSection.get()
HedSchemaUnitClassSection.get_entries_with_attribute()
HedSchemaUnitClassSection.items()
HedSchemaUnitClassSection.keys()
HedSchemaUnitClassSection.values()
HedSchemaUnitClassSection.duplicate_names
HedSchemaUnitClassSection.section_key
- schema_attribute_validators
- schema_compare
- schema_compliance
- schema_io
- base2schema
- owl2schema
- owl_constants
- schema2base
- schema2owl
- schema2wiki
- schema2xml
- schema_util
- wiki2schema
- wiki_constants
- HedWikiSection
HedWikiSection.__init__()
HedWikiSection.Attributes
HedWikiSection.EndHed
HedWikiSection.EndSchema
HedWikiSection.Epilogue
HedWikiSection.HeaderLine
HedWikiSection.Prologue
HedWikiSection.Properties
HedWikiSection.Schema
HedWikiSection.UnitModifiers
HedWikiSection.UnitsClasses
HedWikiSection.ValueClasses
- HedWikiSection
- xml2schema
- xml_constants
- schema_validation_util
- tools
- analysis
- annotation_util
- column_name_summary
- event_manager
- file_dictionary
- FileDictionary
FileDictionary.__init__()
FileDictionary.create_file_dict()
FileDictionary.get_file_path()
FileDictionary.iter_files()
FileDictionary.key_diffs()
FileDictionary.make_file_dict()
FileDictionary.make_key()
FileDictionary.output_files()
FileDictionary.file_dict
FileDictionary.file_list
FileDictionary.key_list
FileDictionary.name
- FileDictionary
- hed_tag_counts
- hed_tag_manager
- hed_type
- hed_type_counts
- hed_type_defs
- hed_type_factors
- hed_type_manager
- key_map
- sequence_map
- tabular_summary
- temporal_event
- bids
- bids_dataset
- bids_file
- bids_file_dictionary
- BidsFileDictionary
BidsFileDictionary.__init__()
BidsFileDictionary.create_file_dict()
BidsFileDictionary.get_file_path()
BidsFileDictionary.get_new_dict()
BidsFileDictionary.iter_files()
BidsFileDictionary.key_diffs()
BidsFileDictionary.make_dict()
BidsFileDictionary.make_file_dict()
BidsFileDictionary.make_key()
BidsFileDictionary.make_query()
BidsFileDictionary.match_query()
BidsFileDictionary.output_files()
BidsFileDictionary.split_by_entity()
BidsFileDictionary.file_dict
BidsFileDictionary.file_list
BidsFileDictionary.key_list
BidsFileDictionary.name
- BidsFileDictionary
- bids_file_group
- bids_sidecar_file
- bids_tabular_dictionary
- BidsTabularDictionary
BidsTabularDictionary.__init__()
BidsTabularDictionary.count_diffs()
BidsTabularDictionary.create_file_dict()
BidsTabularDictionary.get_file_path()
BidsTabularDictionary.get_info()
BidsTabularDictionary.get_new_dict()
BidsTabularDictionary.iter_files()
BidsTabularDictionary.key_diffs()
BidsTabularDictionary.make_dict()
BidsTabularDictionary.make_file_dict()
BidsTabularDictionary.make_key()
BidsTabularDictionary.make_new()
BidsTabularDictionary.make_query()
BidsTabularDictionary.match_query()
BidsTabularDictionary.output_files()
BidsTabularDictionary.report_diffs()
BidsTabularDictionary.set_tsv_info()
BidsTabularDictionary.split_by_entity()
BidsTabularDictionary.file_dict
BidsTabularDictionary.file_list
BidsTabularDictionary.key_list
BidsTabularDictionary.name
- BidsTabularDictionary
- bids_tabular_file
- remodeling
- backup_manager
- BackupManager
BackupManager.__init__()
BackupManager.create_backup()
BackupManager.get_backup()
BackupManager.get_backup_files()
BackupManager.get_backup_path()
BackupManager.get_file_key()
BackupManager.get_task()
BackupManager.restore_backup()
BackupManager.BACKUP_DICTIONARY
BackupManager.BACKUP_ROOT
BackupManager.DEFAULT_BACKUP_NAME
BackupManager.RELATIVE_BACKUP_LOCATION
- BackupManager
- cli
- dispatcher
- Dispatcher
Dispatcher.__init__()
Dispatcher.errors_to_str()
Dispatcher.get_data_file()
Dispatcher.get_schema()
Dispatcher.get_summaries()
Dispatcher.get_summary_save_dir()
Dispatcher.parse_operations()
Dispatcher.post_proc_data()
Dispatcher.prep_data()
Dispatcher.run_operations()
Dispatcher.save_summaries()
Dispatcher.REMODELING_SUMMARY_PATH
- Dispatcher
- operations
- base_op
- base_summary
- convert_columns_op
- factor_column_op
- factor_hed_tags_op
- factor_hed_type_op
- merge_consecutive_op
- number_groups_op
- number_rows_op
- remap_columns_op
- remove_columns_op
- remove_rows_op
- rename_columns_op
- reorder_columns_op
- split_rows_op
- summarize_column_names_op
- summarize_column_values_op
- summarize_definitions_op
- summarize_hed_tags_op
- summarize_hed_type_op
- summarize_hed_validation_op
- summarize_sidecar_from_events_op
- valid_operations
- remodeler_validator
- backup_manager
- util
- visualization
- analysis
- validator
- def_validator
- DefValidator
DefValidator.__init__()
DefValidator.add_definitions()
DefValidator.check_for_definitions()
DefValidator.construct_def_tag()
DefValidator.construct_def_tags()
DefValidator.get()
DefValidator.get_as_strings()
DefValidator.items()
DefValidator.validate_def_tags()
DefValidator.validate_def_value_units()
DefValidator.validate_onset_offset()
DefValidator.issues
- DefValidator
- hed_validator
- onset_validator
- sidecar_validator
- spreadsheet_validator
- tag_util
- char_util
- CharValidator
CharValidator.__init__()
CharValidator.check_for_invalid_extension_chars()
CharValidator.check_invalid_character_issues()
CharValidator.check_tag_invalid_chars()
CharValidator.DEFAULT_ALLOWED_PLACEHOLDER_CHARS
CharValidator.INVALID_STRING_CHARS
CharValidator.INVALID_STRING_CHARS_PLACEHOLDERS
CharValidator.TAG_ALLOWED_CHARS
- CharValidator
- class_util
is_clock_face_time()
is_date_time()
validate_numeric_value_class()
validate_text_value_class()
- UnitValueValidator
UnitValueValidator.__init__()
UnitValueValidator.check_tag_unit_class_units_are_valid()
UnitValueValidator.check_tag_value_class_valid()
UnitValueValidator.validate_value_class_type()
UnitValueValidator.DATE_TIME_VALUE_CLASS
UnitValueValidator.DIGIT_OR_POUND_EXPRESSION
UnitValueValidator.NAME_VALUE_CLASS
UnitValueValidator.NUMERIC_VALUE_CLASS
UnitValueValidator.TEXT_VALUE_CLASS
UnitValueValidator.VALUE_CLASS_ALLOWED_CACHE
- group_util
- string_util
- tag_util
- char_util
- def_validator
- errors